Discovering optimal kinetic pathways for self-assembly using automatic differentiation

Macromolecular complexes are often composed of diverse subunits. Assembling these monomeric subunits into complexes over time faces fundamental obstacles that can be robustly overcome by exploiting a large design space of kinetic protocols.


Structural basis of TFIIIC-dependent RNA polymerase III transcription initiation

Using cryo-EM, the He Laboratory revealed how TFIIIA, TFIIIC, and TFIIIB assemble on the S. cerevisiae 5S rRNA promoter, with TFIIIA bridging TFIIIC-DNA interactions and TFIIIB inducing gene wrapping. smFRET showed DNA bending and partial dissociation, offering insights into Pol III transcription initiation and its distinction from Pol II.


Molecular basis of global promoter sensing and nucleosome capture by the SWR1 chromatin remodeler

How chromatin-based enzymes find nucleosome-free genomic targets in the cell nucleus has been enigmatic. Using cryo-EM, biochemistry and epigenomics, we found a generalizable mechanism showing that the ATP-driven yeast SWR1 remodeler senses accessible chromatin architecture with a protein module that measures free DNA linked flexibly to histone PTM reader domains, enabling SWR1 capture and histone […]


Structure of an endogenous mycobacterial MCE lipid transporter

MCE proteins are major virulence factors in Mycobacterium tuberculosis, the causative agent of tuberculosis, the world’s leading cause of death from a single infectious agent. Here, we describe the endogenous cryo-EM structure of a mycobacterial MCE protein system: a large protein complex of 10+ proteins, this is the first example of a protein complex that […]